SciRoKo 3.4



SciRoKo allows for whole genome microsatellite search and investigation. For example, the whole rice genome may be searched in 55 sec. The integrated microsatellite statistics capabilities makes SciRoKo an powerful tool for comparative genomics.



The command line version for the SciRoKo SSR-search module. SciRoKo allows an easy integration into bioinformatics pipelines.
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The perl script DesignPrimer can be used to design PCR primer pairs for the SciRoKo output using Primer3. An output file is generated that can be directly sent to a company for primer synthesis.


last update: 12.06.2008