Software

PoPoolation  SNP polymorphism in individiual populations (Tajima’s D, Wattersons Theta, etc)

PoPoolation2  SNP polymorphism in multiple populations (Fst, cmh-test, fisher-exact test etc)

PoPoolationTE2   comparative population genomics of TE abundance

Gowinda unbiased analysis of gene set enrichment for genome wide association studies

SciRoKo whole genome microsatellite search and statistics

PanGEA measuring allele specific gene expression using 454 sequencing

MimicrEE2  genome-wide forward simulations of evolving populations

SimulaTE simulate complex landscapes of transposable elements for populations

TrajectorEE simulating and visualizing trajectories for individual loci

Invade (work in progress) simulating TE dynamics

PoPoolation TE

MimicrEE